PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04642.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 554aa    MW: 59559.2 Da    PI: 9.4468
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04642.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-30362420259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp++++ tY+geHnh 
  Zpz_sc04642.1.g00010.1.am.mk 362 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERCRTDPNTFILTYTGEHNHA 420
                                   799************************998****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-30350422IPR003657WRKY domain
PROSITE profilePS5081132.65356422IPR003657WRKY domain
SuperFamilySSF1182901.22E-25360422IPR003657WRKY domain
SMARTSM007742.0E-36361421IPR003657WRKY domain
PfamPF031065.4E-25363419IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MTARTYWQRL AVSAGPGGGA AVPREIILFG SMYWLWHLGG GPLQRAALST VQPAWSCGAR  60
AGDGARLAVW FRFGHGPCPC LFLFIGLVLL RGMTAHGWAA VLTKPSPTWA GFNSSQDFLP  120
ERQALRRSPR GRVEKSSLRP LPRQSINKQK SAPPLISISS PPSRLPQSQP LRVASRVFSG  180
SLSQMEEEHC SNSWDLDAVV RLACRRRRLS PPPVQVNDPF DSFPPTPSLP PQGPPGAPNP  240
ANEKEADAGW RFPDLRSGDG QDGDELLRAL MAARPPVPPS LPPPPLPTLP PLPPPPQQQQ  300
QQPVVVTPTA EVPVQARAGP ASARARAQPS GRQVPGTVQR SKRRKNQVKK VVSHVPADGS  360
SSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCAARKQVE RCRTDPNTFI LTYTGEHNHA  420
APTHRNSLAG TTRHKFPSAA SPPPPSVVVG SSESQQQQQP SPSAPSTSAG LSPTTPLRTP  480
SMEEEDDEEE DELLVEDMEM AGEDELLFLH GDVDSAVPLQ PMSSVFDVVD EPFLGSPWAS  540
TTAGSPAAGA AAGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-173634221977Probable WRKY transcription factor 4
2lex_A1e-173634221977Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613701e-158BT061370.1 Zea mays full-length cDNA clone ZM_BFb0140H07 mRNA, complete cds.
GenBankEU9731031e-158EU973103.1 Zea mays clone 393369 WRKY39v2 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankHQ8587191e-158HQ858719.1 Zea mays clone UT1178 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130964.11e-127putative WRKY DNA-binding domain superfamily protein
TrEMBLB4FB751e-127B4FB75_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G038158_P011e-126(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-45WRKY family protein